File:A-Jump-from-Cavity-Pyrophosphate-Ion-Release-Assisted-by-a-Key-Lysine-Residue-in-T7-RNA-Polymerase-pcbi.1004624.s013.ogv

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Original file (Ogg Theora video file, length 13 s, 860 × 740 pixels, 11.92 Mbps, file size: 18.23 MB)

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English: The movie was mode from one of the above SMD simulations ( direction 1 in S5 Fig ), pulling PPi (in vdW spheres) from the inside to the outside in nanoseconds. In the movie, the nucleic acids are shown in yellow, the protein is shown in white, and the O-helix is highlighted in cyan. The three positively charged residue Lys631, Arg627, and Lys472 are shown in blue, the two negatively charged residue Asp537 and Asp812 are shown in red, and the two magnesium ions are in green. In particular, Lys472 is also highlighted in vdW spheres. The Lys472 side chain closely follows the PPi group, although the SMD force was only implemented on the PPi group but not on Lys472.
Date
Source S1 Movie from Da L, E C, Duan B, Zhang C, Zhou X, Yu J (2015). "A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation". PLOS Computational Biology. DOI:10.1371/journal.pcbi.1004624. PMID 26599007. PMC: 4658072.
Author Da L, E C, Duan B, Zhang C, Zhou X, Yu J
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This file was transferred to Wikimedia Commons from PubMed Central by way of the Open Access Media Importer.
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Date/TimeThumbnailDimensionsUserComment
current12:52, 8 December 201513 s, 860 × 740 (18.23 MB)Open Access Media Importer Bot (talk | contribs)Automatically uploaded media file from Open Access source. Please report problems or suggestions here.

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Format Bitrate Download Status Encode time
VP9 720P 2.5 Mbps Completed 19:40, 15 August 2018 57 s
VP9 480P 1.25 Mbps Completed 19:39, 15 August 2018 38 s
VP9 360P 640 kbps Completed 19:39, 15 August 2018 39 s
VP9 240P 321 kbps Completed 19:39, 15 August 2018 22 s
WebM 360P 597 kbps Completed 14:51, 8 December 2015 17 s
QuickTime 144p (MJPEG) 1.08 Mbps Completed 08:21, 14 October 2024 1.0 s

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