File:43705 2023 225 Fig3.webp

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Captions

Captions

Phylogenetic tree of Mcr-encoding MAGs and McrA

Summary

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Description
Deutsch: Phylogenetic tree of Mcr-encoding MAGs and McrA.

A Maximum-likelihood tree, inferred with IQtree and the best-fit LG+F+R10 model, using a concatenated set of 18 conserved arCOGs. Squares indicate ultrafast bootstrap values of 100 (black) and 95–99 (gray). Diamonds indicate lineages with Mcr-encoding MAGs detected in this study and shown in detail.
B Maximum-likelihood tree, inferred with IQtree and the LG+C60+F+G model, from the amino acid alignment of McrA. Filled circles: McrA identified in a MAG, open circles: metagenomic McrA (unbinned, >100 aa), open squares: abundant mcrA ASVs (>1% relative sequence abundance). Dashed line indicates previously proposed McrA/AcrA groups:

I) McrA from methanogens and ANME (MCR-type),
II) McrA from TACK lineages (MCR-type),
III) McrA-like from proposed and experimentally confirmed alkane oxidizing archaea (ACR-type, Ca. Alkanophagales).
Colors: orange, LCB003; magenta, LCB019; blue, LCB024.
Date
Source Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments. In: Nature: ISME Communications volume 3, No. 22; doi:10.1038/s41586-024-07728-y
Author Mackenzie M. Lynes, Viola Krukenberg, Zackary J. Jay, Anthony J. Kohtz, Christine A. Gobrogge, Rachel L. Spietz, Roland Hatzenpichler
Other versions <nr/>

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current14:50, 27 July 2024Thumbnail for version as of 14:50, 27 July 20242,026 × 1,040 (219 KB)Ernsts (talk | contribs)Uploaded a work by Mackenzie M. Lynes, Viola Krukenberg, Zackary J. Jay, Anthony J. Kohtz, Christine A. Gobrogge, Rachel L. Spietz, Roland Hatzenpichler from ''Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments.'' In: ''Nature'': '' ISME Communications'' volume 3, No: 22; doi:10.1038/s41586-024-07728-y with UploadWizard

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